Hello darkduck,
I have had problems like this before with plasma desktop. Part of the problem of troubleshooting these things with plasma desktop is that kde keeps changing the underlying architecture with just about every new release. The config file that stores the information on number of desktops is
/home/<user_name>/.kde4/share/config/kwinrc. The structure in question looks like:
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[Desktops]
Name_5=
Name_6=
Number=6
Rows=3
(as you can see, my own config file is a bit insane, including unused "Name" garbage, typical of kde, fortunately not fatal in my case though)
In my case, six desktops arranged:
XX
XX
XX
So I would check permissions to make sure that file is writable by you as the user. My file perms are:
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drwx------ 1 ghmitch ghmitch 4238 Jun 9 20:12 /home/ghmitch/.kde4/share/config/
-rw------- 1 ghmitch ghmitch 2564 Jun 9 20:11 /home/ghmitch/.kde4/share/config/kwinrc
Also, when you change the setting, you can cat that file and make sure the changes are written to it. If write permissions are not the problem, it may be that the kwinrc file has become corrupted in a way that the kde configuration script is unable to properly edit it. I am not sure how to deal with that one. I usually try to find the anomaly that is causing the problem by comparing with the same file of another user. If that doesn't work, sometimes removing the config file will cause kde to regenerate it (no guarantees on that though). I assume that you are attempting to make the change by right clicking the pager and then clicking on pager settings.
Hope something here is helpful for you. I stop by your blog every now and then and enjoy reading your posts.
- George