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urpmi --replacefiles --auto-update --auto
Next it started to install/upgrade 2,659 packages which ended with a a error that two VLC plugins could not be installed.
I then ran the update again and surprisingly another 1,240 packages where installed/updated and again the error on the VLC plugins.
I have no idea if I would have had bootable system without the second update but I would suggest that
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urpmi --replacefiles --auto-update --auto
I don't know if this affects the GUI upgrade.